PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007473.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 324aa    MW: 35849.4 Da    PI: 6.9482
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007473.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20135184255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Pbr007473.1 135 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 184
                  59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.05E-34134194No hitNo description
Gene3DG3DSA:3.30.730.102.7E-32135193IPR001471AP2/ERF domain
SMARTSM003801.8E-38135198IPR001471AP2/ERF domain
PROSITE profilePS5103223.235135192IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-23135193IPR016177DNA-binding domain
PfamPF008471.4E-14136184IPR001471AP2/ERF domain
PRINTSPR003672.9E-11136147IPR001471AP2/ERF domain
PRINTSPR003672.9E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MATSIDLYSS STMTSDLSDP LREDQLMKAL MPFMKSASST SPSTSYTYPP QNNQNFNLYP  60
DFCSAPMISQ AGAIGLNQLT PSQILQIQSQ MILQQHQQKQ QISAFASSPA HTLKLLHPKA  120
VPMKQAGTPS KPTKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAEE AALAYDKAAF  180
KLRGDFARLN FPHLRHQGAL VCGDFGHYKP LHSSVDAKLQ AICQSLAANS KKQGNTGEPC  240
PVAERKPVVS APLEAKMDDS VKSELKSEWE AFPSSSYSPS PSDESSSPES DITFLDFSDS  300
QWDEAENFGL EKYPSVEIDW SAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21134192160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324750.0GU732475.1 Malus x domestica AP2 domain class transcription factor (AP2D51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366366.10.0PREDICTED: ethylene-responsive transcription factor ERF060
SwissprotO656652e-82ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLD5L1350.0D5L135_MALDO; AP2 domain class transcription factor
STRINGXP_009366366.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-60related to AP2 4