![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr007146.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 20920.3 Da PI: 8.3786 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.2 | 8.6e-13 | 10 | 49 | 2 | 45 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 ++ GVr+++ +grWvAeI+d s ++ r +lg+f+ aeeAa a Pbr007146.1 10 RFLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDQAEEAALA 49 578******.7*********42...36**************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.48E-21 | 9 | 56 | No hit | No description |
SMART | SM00380 | 1.1E-16 | 10 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-17 | 10 | 50 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.683 | 10 | 49 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-12 | 11 | 53 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.7E-7 | 11 | 22 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-7 | 13 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-7 | 33 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence Send to blast |
MRKGNKNGKR FLGVRQRPSG RWVAEIKDSS QKLRLWLGTF DQAEEAALAN AKTNFPSCHM 60 LNTHEENCSI LRKNPRLYQL LQHAIMKNHA RSSSLNSAKI NPWDRNQIRG IDFDILVEET 120 IVCSSSGAAS TSGQYQGDHD EDRNNKLCAL SFGSCKVYSS VVVAPSFSAS SQCQQAHDEE 180 EKGYQEA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr007146.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008393384.3 | 1e-130 | ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A498I3A3 | 1e-128 | A0A498I3A3_MALDO; Uncharacterized protein | ||||
STRING | XP_008393384.1 | 1e-128 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12349 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-19 | related to AP2 11 |