PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006641.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 381aa    MW: 41885 Da    PI: 7.6332
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006641.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.53.1e-3156178289
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa............seceaesssssasnsss 87 
                   g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +ak++i+el+ ++ +++            +        ss++ +s+
  Pbr006641.1  56 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDAAKHEIDELPPLPMPPSgsfglnhpslglT--------SSHGDQSN 145
                  689*************************************************************888884333322222110........11111111 PP

          TCP  88 g...............................k 89 
                  +                               +
  Pbr006641.1 146 AhaqlshnhsgegprsaidrsnfwptgsdalwR 178
                  111111112222233333333333333333331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.5E-2858170IPR005333Transcription factor, TCP
PROSITE profilePS5136930.4758116IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MIKSPISEAD LQEAGAGSSS RDDQANKISS NPNLSRPSTP WLRLKDPRIV RVSRAFGGKD  60
RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ ERLGLNQPSK VVDWLLDAAK HEIDELPPLP  120
MPPSGSFGLN HPSLGLTSSH GDQSNAHAQL SHNHSGEGPR SAIDRSNFWP TGSDALWRAK  180
SKEIVRDTRN EDEGNQKDNL GISDDQEQAG NNVDGNSSNT FLRSNTNPPF FPGLLNSSTN  240
MPYAYHNWDH SHQTSNFPLS QLGSHGFQSE TTDLHNFRNV LSLPSTLSLS TTQSYFPSHN  300
TAATGEMDPR QFNHLQMLNS SSSTRTSQNL LPNFLSTPAL YPSSQTLRAP HLSMVTKLVH  360
SSDNTGSGHH PNNNQEPPSR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1763117155Putative transcription factor PCF6
5zkt_B1e-1763117155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010670.0KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350418.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_009350419.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_009350420.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_009350421.10.0PREDICTED: transcription factor TCP13-like
TrEMBLA0A498HII40.0A0A498HII4_MALDO; Uncharacterized protein
STRINGXP_009350418.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-49plastid transcription factor 1