PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006477.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 384aa    MW: 42095.5 Da    PI: 8.5136
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006477.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.13.9e-31561972133
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec....eaesssssasnsssgk 89 
                   g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +ak++i+el+ ++ +++      +      +++++ +++++++ ++
  Pbr006477.1  56 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQEKLGLNQPSKVVDWLLDAAKHEIDELPPLPMPPPgtfglnH-PslvlTSSHDDQTNAHPQLSH 152
                  689*************************************************************888884443321.122332222233333344445 PP

          TCP  90 aaksaakskksqksaasalnlakesrakararare.rtrekmrik 133
                  + + + +s+  ++s+    nl++  rak+++ ar  r++e+  ++
  Pbr006477.1 153 NDRGEGPSSGIDRSNVWPTNLDALWRAKSKEIARHtRNEEEEGKR 197
                  555555666666666666777777789999999986666655554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.03758116IPR017887Transcription factor TCP subgroup
PfamPF036346.5E-2858182IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MIKSLVSEAD LKEAGAGSAS RDEQANKISS NPNLSRSSTP WPRLKDPRIV RVSRAFGGKD  60
RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ EKLGLNQPSK VVDWLLDAAK HEIDELPPLP  120
MPPPGTFGLN HPSLVLTSSH DDQTNAHPQL SHNDRGEGPS SGIDRSNVWP TNLDALWRAK  180
SKEIARHTRN EEEEGKRKDN LGISDDQKQA GNNIDGNSSN TFLTRGSTTN PPFFPGLLNS  240
STNMPYDYQN WDHPHQTSSF PLSQLGSHGF QSQTTDLHNF LNVLSLPSTL SLSTTQSYFP  300
SHNAAATGEI DPRQFNHLQL LNSSSSTSTS QNLLPNSLST PALYPSSQTL RAPHLSMVTK  360
LVHSSNNTGS GHQPNNDQGP LHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1763117155Putative transcription factor PCF6
5zkt_B6e-1763117155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006477.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010670.0KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365917.10.0PREDICTED: transcription factor TCP13-like
TrEMBLA0A498J3C30.0A0A498J3C3_MALDO; Uncharacterized protein
STRINGXP_009365917.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-42plastid transcription factor 1