PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005893.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 171aa    MW: 18586 Da    PI: 9.9148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005893.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-194594255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  ykGVr++  +g+WvAeIr+p   + r +r +lg+f t +eAa a++aa++kl+g
  Pbr005893.1 45 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATSYEAALAYDAAARKLYG 94
                 69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.45E-2144104No hitNo description
PROSITE profilePS5103221.64145102IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2145103IPR016177DNA-binding domain
SMARTSM003801.7E-3445108IPR001471AP2/ERF domain
PfamPF008471.3E-134594IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3045104IPR001471AP2/ERF domain
PRINTSPR003673.2E-94657IPR001471AP2/ERF domain
PRINTSPR003673.2E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSTSEMSGGS SSVGVAEKPA KRPVQGSSRK GCMKGKGGPE NAMCTYKGVR QRTWGKWVAE  60
IREPNRGARL WLGTFATSYE AALAYDAAAR KLYGSKAKLN LPDQQAPNYR HRQLNQHLQH  120
QVFPSSANPG VPPQIPNQTL VQNNPSGTGT NPACYIRCCC ERYCSTCYSQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1846102663ATERF1
3gcc_A3e-1846102663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005893.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336823.11e-104PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ22e-45DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A498J8W41e-80A0A498J8W4_MALDO; Uncharacterized protein
STRINGXP_009336823.11e-103(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]