PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005457.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YC
Protein Properties Length: 268aa    MW: 29781.6 Da    PI: 6.3395
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005457.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.33e-55861891101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   i+k+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi
  Pbr005457.1  86 QLQTFWANQyqeIDKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 183
                  89******998999************************************************************************************ PP

        NF-YC  96 vprdel 101
                  vpr++l
  Pbr005457.1 184 VPREDL 189
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.36E-3373180IPR009072Histone-fold
PfamPF008081.7E-21108171IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-37109186IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDPQGHNQPQ SMGMVGSGAQ LTYGSNPYQH NQMVGNPNLG SVSATVGAMQ SASQSPGAQL  60
AQHQLAQHQL AYQHIHQQQQ QQLQQQLQTF WANQYQEIDK VTDFKNHSLP LARIKKIMKA  120
DEDVRMISAE APVIFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA ITRTDIFDFL  180
VDIVPREDLK DEVLGSIPRG TVSVGGPADA LPYCYMPPQH APQGGAPGMM MGKPMMDPSM  240
YAQQSNPYMS QPMWQQAPDQ QQSPSDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B7e-411011861297NF-YC
4awl_C6e-41101186994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B6e-41101186994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4g91_C1e-40721864119HapE
4g92_C1e-40721864119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349978.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_009373981.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B22e-91NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLM5W0Q01e-169M5W0Q0_PRUPE; Uncharacterized protein
STRINGGLYMA19G42460.11e-137(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-77nuclear factor Y, subunit C9