PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004296.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 203aa    MW: 23166.6 Da    PI: 4.5772
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004296.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.91.2e-3781311128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lppGfrF+Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ k+ +e k+wyf+s+r+        +nr+t++gyWk+ g +++++s+   
  Pbr004296.1   8 LPPGFRFDPTDEELVVHFLQRKATLLPFHP-DVIPDLHLYPYDPWELNGKALSEGKQWYFYSRRA--------QNRVTSNGYWKTLGIEEPIFSSsss 96 
                  79*************************999.99**************97777889*******985........589******************9776 PP

          NAM  96 .kgelvglkktLvfykgrapk.gektdWvmheyrl 128
                   ++++vg+k+ L+fy g+ap+ g kt+W+mheyrl
  Pbr004296.1  97 nSTSKVGMKRYLTFYVGEAPNsGIKTNWIMHEYRL 131
                  66667**********997765289*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-464168IPR003441NAC domain
PROSITE profilePS5100545.7938169IPR003441NAC domain
PfamPF023653.0E-249131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGDNQFKLPP GFRFDPTDEE LVVHFLQRKA TLLPFHPDVI PDLHLYPYDP WELNGKALSE  60
GKQWYFYSRR AQNRVTSNGY WKTLGIEEPI FSSSSSNSTS KVGMKRYLTF YVGEAPNSGI  120
KTNWIMHEYR LSSSASDCAS SSTTTRSSKR RGQPKTEYSG YVLCRVYERD EEEDDDDDGT  180
ELSCLDEVFL SLDDLDEISL PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-38417013166NO APICAL MERISTEM PROTEIN
1ut4_B1e-38417013166NO APICAL MERISTEM PROTEIN
1ut7_A1e-38417013166NO APICAL MERISTEM PROTEIN
1ut7_B1e-38417013166NO APICAL MERISTEM PROTEIN
3swm_A1e-38417016169NAC domain-containing protein 19
3swm_B1e-38417016169NAC domain-containing protein 19
3swm_C1e-38417016169NAC domain-containing protein 19
3swm_D1e-38417016169NAC domain-containing protein 19
3swp_A1e-38417016169NAC domain-containing protein 19
3swp_B1e-38417016169NAC domain-containing protein 19
3swp_C1e-38417016169NAC domain-containing protein 19
3swp_D1e-38417016169NAC domain-containing protein 19
4dul_A1e-38417013166NAC domain-containing protein 19
4dul_B1e-38417013166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004296.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009333614.11e-150PREDICTED: NAC domain-containing protein 104-like isoform X2
SwissprotQ8GWK66e-81NC104_ARATH; NAC domain-containing protein 104
TrEMBLD9ZJ881e-118D9ZJ88_MALDO; NAC domain class transcription factor
STRINGXP_008391397.11e-117(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-74xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]