PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001559.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 378aa    MW: 39368.8 Da    PI: 5.8583
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001559.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.62.2e-3490191399
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaaks 93 
                  ++++++ ++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++        + + s s++ +s +   +s
  Pbr001559.1  90 TRRSSTTDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlkIPTTASTSVEDNSLP--PSS 185
                  68999**********************************************************887774443333323111222222211222..111 PP

          TCP  94 aakskk 99 
                  ++k+k+
  Pbr001559.1 186 TKKRKR 191
                  111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.6E-2894179IPR005333Transcription factor, TCP
PROSITE profilePS5136925.45395149IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MTSYLEDQDD DGGASDLSTS TGDLGDNDHT NRDGVVSKQL HYDETTEFHS LKEEPIDSDP  60
PQPPQAYPIG MVPVAMPMPM SVPSAVSTLT RRSSTTDRHT KVEGRGRRIR IPATCAARIF  120
QLTRELGHKS DGETVRWLLE HAEQAIIEAT GTGTVPAIAV SVGGTLKIPT TASTSVEDNS  180
LPPSSTKKRK RPSNSEFVDV KNDAVSQSSG LAPVSPSVPQ GLVPVWAVGG TGLMVPANAL  240
WIGPVGSGAG PSGQPQIWAL SPTMTPVFNM AGAARPISSF VANSGGGGAG VVDDRAPSPA  300
LSNSAANTST VGPRAAMWSS TTMAPSMSSS SHNSNGSGSG ATTKSQMLRD FSLQIYDKQE  360
LQLMGRPVGP ENHNQTQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362837.10.0PREDICTED: transcription factor TCP9-like
SwissprotO646475e-64TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A498K0T30.0A0A498K0T3_MALDO; Uncharacterized protein
STRINGXP_009362837.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-57TCP family protein