PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01405g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 91aa    MW: 10785.2 Da    PI: 8.6917
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01405g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.4e-10447344
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              +WTt   +++ +a  ++ ++   +W+ Iar++g g++ ++++ ++
  Peaxi162Scf01405g00013.1  4 NWTTRQNKKFEEALVLYDKDtsdRWHNIARYVG-GKSIEEVRRHY 47
                              7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.403155IPR017884SANT domain
SMARTSM007176.9E-7153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-5457IPR009057Homeodomain-like
PfamPF002493.1E-7447IPR001005SANT/Myb domain
SuperFamilySSF466892.22E-13458IPR009057Homeodomain-like
CDDcd001672.36E-6447No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MACNWTTRQN KKFEEALVLY DKDTSDRWHN IARYVGGKSI EEVRRHYDLL VKDITQIEND  60
QVPLPNYRTA ESCNARGYAN EQRLLKNLKL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-255911193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339257.18e-52PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB84e-33RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2G2VVI48e-51A0A2G2VVI4_CAPBA; Protein RADIALIS-like 2
STRINGSolyc10g080920.1.11e-49(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-35RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]