PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01066g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 204aa    MW: 22126.9 Da    PI: 9.7975
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01066g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.8e-212776255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAaka++aa++ ++g
  Peaxi162Scf01066g00013.1 27 HYRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAAKAYDAAARDFRG 76
                              6********.**********864...6**********************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.0782784IPR001471AP2/ERF domain
CDDcd000181.06E-192784No hitNo description
PfamPF008475.6E-142776IPR001471AP2/ERF domain
SMARTSM003802.0E-402790IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-232785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-332784IPR001471AP2/ERF domain
PRINTSPR003672.0E-112839IPR001471AP2/ERF domain
PRINTSPR003672.0E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAMKEKMKKG SGNINRNTNG VVKDQVHYRG VRKRPWGRYA AEIRDPTKKS RVWLGTFDTA  60
EEAAKAYDAA ARDFRGPKAK TNFPLPSENQ CPSNSTESSS GETGVHAPPQ LDLTRHLGAE  120
DGHVMNGFPV LHQQPAVAVL PNGQPILLFD GSAFLRTGVV NRFEPVAVQF NGANDRVVHS  180
DSGSSSVGRK GLDLDLNLAP PLEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-222785564ATERF1
3gcc_A5e-222785564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595390.14e-77PREDICTED: ethylene-responsive transcription factor 4
RefseqXP_009609806.14e-77PREDICTED: ethylene-responsive transcription factor 4
SwissprotQ9LW494e-77ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLE7FKW03e-75E7FKW0_TOBAC; Ethylene response factor 3b
STRINGXP_009595390.11e-76(Nicotiana tomentosiformis)
STRINGXP_009609806.11e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-31erf domain protein 9