PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01052g00024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 143aa    MW: 16931.8 Da    PI: 8.9689
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01052g00024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1872121254
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                               +y+GVr+++ +g+++AeIrdp   + k +r +lg++ t+e+Aa a+++a+ k++
  Peaxi162Scf01052g00024.1  72 RYRGVRRRP-WGKFAAEIRDP---KrKGARLWLGTYETPEDAALAYDRAAFKIR 121
                               8********.**********8...4334***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.44E-2571127No hitNo description
SMARTSM003802.6E-2572141IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1972123IPR016177DNA-binding domain
PfamPF008472.4E-1372122IPR001471AP2/ERF domain
PROSITE profilePS5103221.23272130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-2672122IPR001471AP2/ERF domain
PRINTSPR003673.2E-107384IPR001471AP2/ERF domain
PRINTSPR003673.2E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MHPDISTDFD LSILDSVDHL HQFNCNNSDF SIEKLEKTDE NEDSTTPRSS SQSLDNSEFR  60
EIEENQMNNW KRYRGVRRRP WGKFAAEIRD PKRKGARLWL GTYETPEDAA LAYDRAAFKI  120
REYGRRGDRA RRILPQYYKK KGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2471121454ATERF1
3gcc_A4e-2471121454ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345610.13e-41PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A2G2WT191e-41A0A2G2WT19_CAPBA; Ethylene-responsive transcription factor 1
STRINGPGSC0003DMT4000180851e-40(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.19e-28ethylene-responsive element binding factor 13