PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01006g00035.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-YB
Protein Properties Length: 195aa    MW: 21656.2 Da    PI: 6.5423
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01006g00035.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.17.3e-5522117297
                     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                               +e d+flPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk y
  Peaxi162Scf01006g00035.1  22 KELDKFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKGY 106
                               688********************************************************************************** PP

                     NF-YB  87 lkkyrelegek 97 
                               l+kyre+egek
  Peaxi162Scf01006g00035.1 107 LNKYRETEGEK 117
                               *********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.9E-5219134IPR009072Histone-fold
SuperFamilySSF471133.11E-4025145IPR009072Histone-fold
PfamPF008082.1E-272791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.1E-195573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.1E-197492No hitNo description
PRINTSPR006153.1E-1993111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MTGKRSQNSP VGSPLSGNVS DKELDKFLPI ANVSRIMKKS LPANAKISKE AKETVQECVS  60
EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFENYV GPLKGYLNKY RETEGEKNIM  120
ARNEEPSEVP TTSNSANTYD HVTKFSLARP ELIQSFNNGN FSEMNNLKSY GDNFGRVIGY  180
GENVTSAANL HGVEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4522112292Transcription factor HapC (Eurofung)
4g92_B2e-4522112292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-108HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787043.11e-110PREDICTED: nuclear transcription factor Y subunit B-3-like isoform X1
RefseqXP_016490537.11e-110PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233109e-62NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A1S4BNT71e-109A0A1S4BNT7_TOBAC; nuclear transcription factor Y subunit B-3-like
TrEMBLA0A1U7X8671e-109A0A1U7X867_NICSY; nuclear transcription factor Y subunit B-3-like isoform X1
STRINGXP_009787043.11e-110(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-64nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Han X, et al.
    Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis.
    J. Exp. Bot., 2013. 64(14): p. 4589-601
    [PMID:24006421]
  2. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  3. Hossain MA, et al.
    Identification of Novel Components of the Unfolded Protein Response in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 650
    [PMID:27242851]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]