PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00946g00063.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 158aa    MW: 18071.8 Da    PI: 7.9127
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00946g00063.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.8e-211364256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f taeeAa+a+++a+ +l+g+
  Peaxi162Scf00946g00063.1 13 KYRGIRRRP-WGKYAAEIRDPTRNG--ARLWLGTFETAEEAARAYDRAAFSLRGH 64
                              8********.**********98887..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-351378IPR001471AP2/ERF domain
PfamPF008472.0E-141364IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-321372IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-241372IPR016177DNA-binding domain
CDDcd000182.64E-291373No hitNo description
PROSITE profilePS5103225.0011371IPR001471AP2/ERF domain
PRINTSPR003671.5E-111425IPR001471AP2/ERF domain
PRINTSPR003671.5E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MENDDQKGRR ENKYRGIRRR PWGKYAAEIR DPTRNGARLW LGTFETAEEA ARAYDRAAFS  60
LRGHQAILNF PNDGHYHGNN NTNVTPRPGP TYELPKGHIP SSSLPSSSST SSDQQDNVKL  120
EGHDLEEKVI EFEYLDNNLL DELLGPQVHR QANKRPKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-29573274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610278.17e-83PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_016485379.17e-83PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC54e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S4B9252e-81A0A1S4B925_TOBAC; ethylene-responsive transcription factor ERF098-like
STRINGXP_009610278.13e-82(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-27ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]