PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00946g00053.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 219aa    MW: 24704.5 Da    PI: 5.0312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00946g00053.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-1886136255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr ++ +g+++AeIrd + ng   r+++g+f++ae Aa a+++a+ +++g
  Peaxi162Scf00946g00053.1  86 NYRGVRKRP-WGKFAAEIRDSTRNG--VRVWIGTFDSAEAAALAYDQAAFAMRG 136
                               59*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.67E-2085145No hitNo description
SMARTSM003802.4E-3686150IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2286146IPR016177DNA-binding domain
PfamPF008473.3E-1386136IPR001471AP2/ERF domain
PROSITE profilePS5103222.69586144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2986145IPR001471AP2/ERF domain
PRINTSPR003679.1E-138798IPR001471AP2/ERF domain
PRINTSPR003679.1E-13126146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDSSFIHYNS SYENYSPESS LFSWDDLLFQ HNALPFNVND TEDMLLLNVV TNGGTGTIKE  60
SSAETTNSSS SKEEEVNSCE PNKEKNYRGV RKRPWGKFAA EIRDSTRNGV RVWIGTFDSA  120
EAAALAYDQA AFAMRGSMAI LNFPVEVVKE SLSELKCRFD ESCSPVIALK KRHSMRKRTV  180
SRRNRVKKDE ANANVVVFED LGAEYLEELL SSSECITNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2985147163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181188RRNRVKKD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453436.11e-121PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_018630421.11e-121PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y92e-96ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S3YMC61e-120A0A1S3YMC6_TOBAC; ethylene-responsive transcription factor 1B-like
STRINGXP_009615714.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-49ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]