PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00931g00117.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 96aa    MW: 11187.4 Da    PI: 7.7637
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00931g00117.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.7e-10652347
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                               W+++  +l+ +a + +  +   +W+  a+ +g g+t++++ks++ k+
  Peaxi162Scf00931g00117.1  6 TWSPQQNKLFENALAIYDRDtpdRWRNLAKAVG-GKTEEEVKSHYEKL 52
                              7*****************99*************.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.198257IPR017884SANT domain
SMARTSM007174.4E-8355IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-12561IPR009057Homeodomain-like
CDDcd001673.79E-7653No hitNo description
PfamPF002498.3E-8652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-5659IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASNSTWSPQ QNKLFENALA IYDRDTPDRW RNLAKAVGGK TEEEVKSHYE KLVEDITHIE  60
SGNVPLPNYN KANGGRSNKN YTFMDEEHRL RYMKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-30296693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264431.12e-53PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB81e-31RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A314L5P74e-52A0A314L5P7_NICAT; Protein radialis-like 6
STRINGXP_009586717.12e-52(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-34RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]