PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00767g00043.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 434aa    MW: 47757.2 Da    PI: 7.4133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00767g00043.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12275320454
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L
  Peaxi162Scf00767g00043.1 275 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINEL 320
                               799***********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.4E-5427208IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.13271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-14274324No hitNo description
SuperFamilySSF474598.51E-18274335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10275320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16275330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-16277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MEQLMVPSSS KLSSLPQGGD NQHALGLQQM LQNVVKNQAE WWAYAIFWQT SCDDEGKVFL  60
AWGDGYFQGA NGKGDAKNYK GSSCSSHAQL ERKKVIRGIQ ALVDGNVGSD HSTDDLVNDV  120
TDAEWFYVMS LARSFSAGDG SVVGKAFSSG SFVWLTSGNQ QCERAKEAQV HGIQTMLCIP  180
TSNGVLELGS THIIKENLSL VQQVKSLFLG KNICFADIGL VTGLQDNDKK LEHISIISKG  240
VPKCEHLDSD EKTPKKRGRK AKLAGVLDPE HMALNHVEAE RQRREKLNHR FYALRSVVPN  300
VSRMDKASLL SDAVSYINEL KAKVDELELK LKREPSAADA QSTTTSVDQV TRPNSSAVEV  360
KIVGTDAMIR VQSENVNYPS AKLMNALQHL QLKVHHASIS TVHNLMLQDV VVKIPQGLRD  420
EDGLRTALLT RLEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-36272089192Transcription factor MYC3
4rqw_B4e-36272089192Transcription factor MYC3
4rs9_A4e-36272089192Transcription factor MYC3
4yz6_A4e-36272089192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435398.10.0PREDICTED: transcription factor MYC2-like isoform X1
RefseqXP_018632639.10.0PREDICTED: transcription factor MYC2-like isoform X1
RefseqXP_018632642.10.0PREDICTED: transcription factor MYC2-like isoform X1
RefseqXP_018632644.10.0PREDICTED: transcription factor MYC2-like isoform X1
TrEMBLA0A1S3X6Q70.0A0A1S3X6Q7_TOBAC; transcription factor MYC2-like isoform X1
STRINGXP_009623534.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-77bHLH family protein