PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00690g00052.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 134aa    MW: 15507.2 Da    PI: 6.5241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00690g00052.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-191869256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                              +y+GVr ++ +g+++AeIrd s    +  r++lg+f +aeeAa+a+++a+ +++g+
  Peaxi162Scf00690g00052.1 18 KYRGVRKRP-WGKFAAEIRDTSR---QgVRVWLGTFNSAEEAARAYDRAAYSMRGH 69
                              8********.**********432...24**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.17E-181877No hitNo description
Gene3DG3DSA:3.30.730.106.4E-311878IPR001471AP2/ERF domain
PfamPF008471.4E-141869IPR001471AP2/ERF domain
PROSITE profilePS5103223.2351876IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-221877IPR016177DNA-binding domain
SMARTSM003803.9E-341882IPR001471AP2/ERF domain
PRINTSPR003674.5E-111930IPR001471AP2/ERF domain
PRINTSPR003674.5E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDEEPSNRGK IKDTEEVKYR GVRKRPWGKF AAEIRDTSRQ GVRVWLGTFN SAEEAARAYD  60
RAAYSMRGHL AILNFPEEYN LPSTSSHFNT GSSMASSSMH ARNNEQQKEV FEFEYLDDKL  120
LEELLDCDQA HKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-3791205114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068552.12e-57ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC56e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T01e-55A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGSolyc03g005500.1.11e-55(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.13e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]