PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00652g10013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family RAV
Protein Properties Length: 328aa    MW: 38316.1 Da    PI: 6.8689
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00652g10013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.1e-114290156
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              s++kGV     +g W A+I+       +kr++lg+f +++eAa a++ a+ +l+ge
  Peaxi162Scf00652g10013.1 42 SRFKGVV-GQHNGHWGAQIYA------NKRIWLGTFKSEKEAAMAYDSAAIRLRGE 90
                              6899996.4448*******99......8**********99**************97 PP

2B389.23.3e-28159252183
                               EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                               f k+ltpsdv+k++rlv+pkkfa ++           ++++ e+ +l+++d+s r W+++++y+k+s+++v+t+GW++Fvk++ L
  Peaxi162Scf00652g10013.1 159 FTKELTPSDVGKLNRLVIPKKFALKYfpqvigkgddcDNQEFEDSELVFYDTSRRLWKFRYCYWKSSQSFVFTRGWNRFVKDKSL 243
                               89******************************9999977777889**************************************** PP

                               -TT-EEEEE CS
                        B3  75 kegDfvvFk 83 
                               k++D++vF+
  Peaxi162Scf00652g10013.1 244 KAKDTIVFH 252
                               ********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-154298IPR016177DNA-binding domain
CDDcd000181.14E-234299No hitNo description
PfamPF008471.4E-64290IPR001471AP2/ERF domain
SMARTSM003807.4E-2043103IPR001471AP2/ERF domain
PROSITE profilePS5103216.7394397IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-174397IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.0E-32156254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-27157256IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-26158252No hitNo description
PROSITE profilePS5086313.028159275IPR003340B3 DNA binding domain
SMARTSM010191.7E-21159275IPR003340B3 DNA binding domain
PfamPF023627.6E-25159252IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEEVISSTTT YVSENSYESS SNNQLRNKKR PRDEGKACNS SSRFKGVVGQ HNGHWGAQIY  60
ANKRIWLGTF KSEKEAAMAY DSAAIRLRGE DSHRNFPWTN LTLLEPSFQG QFSTEDILRM  120
IKDGSYPSKF DEFLKEKYEE NHPLNTIQGN EVFSYKQLFT KELTPSDVGK LNRLVIPKKF  180
ALKYFPQVIG KGDDCDNQEF EDSELVFYDT SRRLWKFRYC YWKSSQSFVF TRGWNRFVKD  240
KSLKAKDTIV FHSCEYKIGP EEICNVFVID VVKANEDLPM ASEFHLQQAS DYDHEVERKE  300
CIMKIYSTDR VVEPVMLFGQ QIGWTERQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2515825113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771974.11e-145PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_016492322.11e-145PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6883e-87RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A1S4BTX11e-144A0A1S4BTX1_TOBAC; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A1U7WBE01e-144A0A1U7WBE0_NICSY; AP2/ERF and B3 domain-containing transcription factor At1g51120
STRINGXP_009771974.11e-145(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.15e-89RAV family protein