PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00652g00422.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family G2-like
Protein Properties Length: 322aa    MW: 36284.9 Da    PI: 6.4493
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00652g00422.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.92.6e-343387155
                   G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                              kprlrWt eLHerFv+av+qLGG++kAtPkti++ m+vkgLtl+h+kSHLQkYRl
  Peaxi162Scf00652g00422.1 33 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMKSMGVKGLTLYHLKSHLQKYRL 87
                              79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1073090IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-323088IPR009057Homeodomain-like
SuperFamilySSF466891.97E-173290IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-243388IPR006447Myb domain, plants
PfamPF002491.5E-93586IPR001005SANT/Myb domain
PfamPF143792.4E-25131177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MYSNGISDYH HHHHNFNNIM EDGTCLVLTA DHKPRLRWTA ELHERFVDAV TQLGGPDKAT  60
PKTIMKSMGV KGLTLYHLKS HLQKYRLGKQ SYKEATENNN DESSVTESQE VHSSTLSSSR  120
VVAQDINDGY QVTEAFREQM EVQRRLHEQL EVQRHVQLRV EAQGKYLQTI LEKACKALNY  180
KAAACPDLEA AREELSELAI KVSTDCDGIV TVSSFPEVIM SFENKNASNI SARIGDCLSD  240
DCLPSNRSPV SPMRIGALKK RPRAFANGDA LPVENNMRQT LRSSRRVRKD IAIEPEELER  300
ADPYEAPVVI HDLDEAEISK AM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-193389258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-193389258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-193389258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-193389258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-193389258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-193389258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-193389258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-193389258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257407.11e-158PREDICTED: protein PHR1-LIKE 3-like isoform X2
SwissprotQ8LAJ71e-100PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A1S3ZSR21e-156A0A1S3ZSR2_TOBAC; myb family transcription factor APL-like isoform X2
TrEMBLA0A1U7Y4Q61e-156A0A1U7Y4Q6_NICSY; myb family transcription factor APL-like isoform X2
STRINGXP_009794233.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37912344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-92G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]