PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00647g00411.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 596aa    MW: 66503.3 Da    PI: 6.0648
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00647g00411.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.41.5e-1565140190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +f+++YA++vGFs+++ + ++ k +g i++ +f Cs e +++++ ++              C  +l++++++++ w+vtk++++H
  Peaxi162Scf00647g00411.1  65 NFFDAYARRVGFSTQVGQFSRAKPDGPIISWDFSCSSEDSKRKNVES--------------CSSMLRIERKDSDSWVVTKFVEDH 135
                               69**********************************99888887766..............************************ PP

                      FAR1  86 nHela 90 
                               nH+++
  Peaxi162Scf00647g00411.1 136 NHSIV 140
                               **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1265140IPR004330FAR1 DNA binding domain
PfamPF044342.1E-10284325IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.942291327IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-7302329IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MNVEVIDVER QKRLKSGERI AEPDQASNDS LPDSFTERDA IIEVDDGEEK PYVGMEFQTQ  60
EAAKNFFDAY ARRVGFSTQV GQFSRAKPDG PIISWDFSCS SEDSKRKNVE SCSSMLRIER  120
KDSDSWVVTK FVEDHNHSIV NAGKVHYLRP RRPFAGASKT VLEAPGTPAD VIVSVDGNRV  180
FANSNEGAKN ASHVELNRTT LPVFFKHYER ALESSLEREI ESDFDTNCTT PVLKTASPME  240
QQAANLYTKK VFAKFQEELV ETFAYTANKI DGDETVSKFR VAKYEQDDKA YIVMFNLAEM  300
KASCSCQMFE YVGILCRHIL TVFTVTNVLT VPSHYILKRW TKSAKVRQGA DEEAIVKQGN  360
NSLISRFNHL CLEALRYAEE GAVSVETYDA AISALRDGLR KISIVAKDVA RPPSSQGSGS  420
IQDESIKRTL VTSDTAPSLW PWQDAMPRHF NLNDAGLPAG DLYQPTMTPV AINRDGGLAD  480
NVVVCTCFKS MAWVIENKSL ASKVAVINLK LQDYGMSPAG ETEVHFRLTR VTLEPMLKSM  540
AFISQQLSLP ANRVAVVNLK LQDAKTPSGE TEVKFQVSRE TLGSMLRSMA YIREQL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487806.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_016487807.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_016487808.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_016487809.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_016487810.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_016487811.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC91e-159FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A1S4BG320.0A0A1S4BG32_TOBAC; protein FAR1-RELATED SEQUENCE 3-like
STRINGXP_009616992.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-152FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]