PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00569g00053.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 362aa    MW: 39910.6 Da    PI: 6.3172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00569g00053.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.8e-21169218255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++a++k++g
  Peaxi162Scf00569g00053.1 169 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEGAARAYDEAALKFRG 218
                               7********.**********76....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.38E-36169228No hitNo description
Gene3DG3DSA:3.30.730.104.9E-33169227IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22169227IPR016177DNA-binding domain
PROSITE profilePS5103225.462169226IPR001471AP2/ERF domain
SMARTSM003802.3E-38169232IPR001471AP2/ERF domain
PfamPF008476.7E-14169218IPR001471AP2/ERF domain
PRINTSPR003671.0E-11170181IPR001471AP2/ERF domain
PRINTSPR003671.0E-11192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MCIVKVANQR NKANKFINGR RLSGEEREGN DDGEGINVLG STFSGNINRE EEMSVMVSAL  60
TRVVTGEDTI LNSQGAETWH NNVGSSGLSY LSDYFPRGVG EKRGRDEEQS GQQFLSSSGG  120
ESSNIRTIAS NTPTTEATFI YTTPTYDHNT TTDHQPYGGG INDHQAKRRY RGVRQRPWGK  180
WAAEIRDPYK ATRVWLGTFD TAEGAARAYD EAALKFRGSK AKLNFPENVK LILPHDQQQP  240
LPPHITISNN SPNTLYNVSS ITNPIVHTQP YIDTNINPQV FLNDDFQRLQ SSSSLLNQFM  300
YSTTSQYSSS SLSLSLSSSS SEVPFLPSLY NFQDSQPASQ GSGSDFPTTS SDSTYHPSSS  360
SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-24168229163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU8562511e-67CU856251.8 S.lycopersicum DNA sequence from clone LE_HBa-70F1 on chromosome 4, complete sequence.
GenBankHG9755161e-67HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019260130.11e-109PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A314LCD51e-107A0A314LCD5_NICAT; Ethylene-responsive transcription factor abr1
STRINGXP_009767382.11e-101(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-27ethylene response factor 110