PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00541g00061.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 355aa    MW: 38885.7 Da    PI: 7.5943
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00541g00061.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.62.3e-3851162289
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssa 82 
                                +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+ +    +  s s s 
  Peaxi162Scf00541g00061.1  51 QPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANYSslniSLRSASYSR 135
                               689*************************************************************999996664332111222221 PP

                       TCP  83 snsssg........................k 89 
                               +    +                        +
  Peaxi162Scf00541g00061.1 136 H----NynvtqnlghdtsrgrncfngvgvlS 162
                               1....11223334444444555555555551 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3655163IPR005333Transcription factor, TCP
PROSITE profilePS5136926.58357111IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
METPHDNRNP MQRPNFPLQL LEKREDPISS SSIYPYTSDQ KSNQEPNKKP QPKRTSTKDR  60
HTKVDGRGRR IRMPATCAAR VFQLTKELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN  120
YSSLNISLRS ASYSRHNYNV TQNLGHDTSR GRNCFNGVGV LSSENTSMGL NIFPSGNNFN  180
ANNAMLQAKH ELSDQISIDA DIGRKRRSEE DLAPTLQNNY HMGNYNYMLQ SSNSGSIQAS  240
HDQGQIHPAT TLYMMTNNSS SHHDHRDPNN SLSTFPSIGN LNVRGGSLSN GGLLNFMNFH  300
PSLLGQHSSG GGGGGGMAVE GQLGMLTAMN SFRQIGRDSG DGADDHEDGY HHHPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5142132e-93EF514213.1 Solanum tuberosum strain P6/210 contig r1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604199.11e-160PREDICTED: transcription factor TCP15-like
RefseqXP_016474072.11e-160PREDICTED: transcription factor TCP15-like
TrEMBLA0A1S4ABN51e-159A0A1S4ABN5_TOBAC; transcription factor TCP15-like
STRINGXP_009604199.11e-159(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139471214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-51TCP family protein