PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00535g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 319aa    MW: 35886.4 Da    PI: 10.2709
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00535g00016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.13.1e-42762063130
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 
                                kkdrhski T++g RdRRvRls+ +a++fFdLqd+LGfdk+skt++WL++++k ai el+ + ++s++e+      s++s ss+
  Peaxi162Scf00535g00016.1  76 MKKDRHSKILTSQGHRDRRVRLSIGVARKFFDLQDMLGFDKPSKTLDWLFTKSKLAIEELVTQMNTSHEES------SKKSPSSI 154
                               69************************************************************966666333......22222233 PP

                       TCP  88 g.........kaaksaakskksqksaasalnlakesrakarararertrekm 130
                               +          +++++a++k+ + ++   + la+esrakarararert +k 
  Peaxi162Scf00535g00016.1 155 SecddlvmttTKETKTAQQKQVKLQEDPLHVLARESRAKARARARERTIKKI 206
                               3344555666445555555555555555699999**************8886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-3976206IPR005333Transcription factor, TCP
PROSITE profilePS5136934.53577135IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.869188205IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MFPSGNSNVN PILHYSSPSF HHTTNSSFLG LNGNQILLQQ HQDQISSHYL ASNADLIGAN  60
NQNVCDPLSR GKKLPMKKDR HSKILTSQGH RDRRVRLSIG VARKFFDLQD MLGFDKPSKT  120
LDWLFTKSKL AIEELVTQMN TSHEESSKKS PSSISECDDL VMTTTKETKT AQQKQVKLQE  180
DPLHVLARES RAKARARARE RTIKKIWSQI EAHDNGSGCK TKSNKELKKM EEPNSENNQA  240
SVAAIKQRIH SSVLVPSRIK PSSALGFNSN LSGQKEAMSN YNGYSSNTTQ YWDVRRAIMS  300
SILQGFDQKA WESYHGSQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4001050.0JQ400105.1 Petunia x hybrida putative transcription factor (TCP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793865.11e-107PREDICTED: transcription factor CYCLOIDEA
RefseqXP_009793866.11e-107PREDICTED: transcription factor CYCLOIDEA
RefseqXP_009793867.11e-107PREDICTED: transcription factor CYCLOIDEA
RefseqXP_009793868.11e-107PREDICTED: transcription factor CYCLOIDEA
RefseqXP_016445375.11e-107PREDICTED: transcription factor CYCLOIDEA-like
RefseqXP_016445376.11e-107PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLG0ZGI70.0G0ZGI7_PETHY; Putative transcription factor
STRINGXP_009793865.11e-107(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-27TCP family protein