PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00526g00068.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 869aa    MW: 99026.1 Da    PI: 6.8109
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00526g00068.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.29.6e-1265132290
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                               fY+eYAk++GF +r+ + ++        k +f C k g r+   ++              C+a+l+v+ + ++kw+vtk ++eHn
  Peaxi162Scf00526g00068.1  65 FYDEYAKRMGFPTRVYQYNRV-------KTDFLCDKDGLRKVFGES--------------CDAMLRVEFKGQNKWVVTKYVKEHN 128
                               9***************98887.......678********9998777..............************************* PP

                      FAR1  87 Hela 90 
                               H+l+
  Peaxi162Scf00526g00068.1 129 HSLV 132
                               **97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-765132IPR004330FAR1 DNA binding domain
PfamPF105515.0E-28270361IPR018289MULE transposase domain
PfamPF044344.2E-9544582IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.066548584IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-6559586IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MDVEVIDVKE GNMHQQGGIS DDGDDEPSES GEANVIGRSN APDRDEVVEP RMGMVFHSED  60
RAKIFYDEYA KRMGFPTRVY QYNRVKTDFL CDKDGLRKVF GESCDAMLRV EFKGQNKWVV  120
TKYVKEHNHS LVSPNKVHYQ RPHRHLAVTK KNVPENNPGV GIVPSGVMYV SVDGNRIPVD  180
INRGAKNTRP AESDQAVKNT TPLSFSPRQC NQRRTLGRDA QNLLDYFKKM QAENPGFYYA  240
IQLDEDNRMA NVFWSDARSR NAYRHFGDAV VLDTMYRVNQ CKVPFAPFTG VNHHGQTILF  300
GCALLLDESE ATFVWLFKTF LAAMNDRAPV SIITDQDTVM QSAVAQVFPE TRHCINKWHV  360
LRGGQDRMAH VCHMHPNFQV ELYNCINLTE TVEEFESYWE TILDKYDLKK NDWLQSIYNT  420
RRQWVPVYFR DSFFAALSPN QEYECSFFDG YVNQQITLPL FFRQYERALE NSFEKEIEAD  480
FNTMCTSPQL RTPSPMEKQA ATLYTKKIFL KFQEELVETF VYTANRIDGD GTLSTFRVAK  540
FEDDQKAYIV SLHISELKAN CSCQMFECSG ILCRHILTVF TVTNVLTLPS HYILKRWTIN  600
AKCGAEIDEH VLRHDTESMA QRYNSLCREA IRYAEEGSVA QETYNAALGA LKEGGKKVGL  660
AKRNVAKVSP PSSQVSGVGY DNRRTSTSAS EMTPLLWPRQ DEMTKRLNLN DSGIPARTVA  720
DSNAQCMAPV SLHRDDAHTD NTVILPCLKS MTWVMENKTS TPANRVAVIN LKLQDYNKTP  780
SRESEVKFQL SRVTLEPMLK SMAYISEQLS TPANRVAVIN LKLQDTETTS GESEVKFQVS  840
RDTLAAMLRS MAYIREQLSS TVSSLILFS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240041.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3
RefseqXP_019240042.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A1S4D5710.0A0A1S4D571_TOBAC; protein FAR1-RELATED SEQUENCE 3-like isoform X2
STRINGXP_009609279.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]