PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00479g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 362aa    MW: 40884.1 Da    PI: 10.3915
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00479g00005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.72.5e-39892422133
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..........seceae 76 
                               ++k+ r+ ki T++g+RdRRvRls+ +a++fFdLq++LGfdk+skt++WL++++k ai elt+ s+++a          s+c   
  Peaxi162Scf00479g00005.1  89 PKKRERSCKILTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLFTNSKLAIEELTNWSTDQAhhpdiagatkSSC--- 170
                               68999***********************************************************777773333332222222... PP

                       TCP  77 sssssasnsssg.....................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                  ++++ +  +                     k +++++k++ ++++a+s+  +a+esr  arararert +km  +
  Peaxi162Scf00479g00005.1 171 ---NETA-K--NgasptsecedlaiatneglerKPKRAKEKNEVKNHEATSHVLIARESRDMARARARERTIKKMWSR 242
                               ...1111.1..1223455667788888888885555555589999999998999999*****************9766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-3690240IPR005333Transcription factor, TCP
PROSITE profilePS5136929.92891149IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.693221238IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MFPASNSTGN PLPHPSSTFH SSSPFLGLNG NQILLHHYQD QFSTHYKNAL LRDSTANINN  60
MSLSANNIIN RPNKSYFDSL RSFPSKKKPK KRERSCKILT SQGPRDRRVR LSIGIARKFF  120
DLQEMLGFDK PSKTLDWLFT NSKLAIEELT NWSTDQAHHP DIAGATKSSC NETAKNGASP  180
TSECEDLAIA TNEGLERKPK RAKEKNEVKN HEATSHVLIA RESRDMARAR ARERTIKKMW  240
SRIETSERSA NYSQIKSNFF GKKDIREMEE QFCKNKLQAS EGPNKEMFQG SGVTKIKIKP  300
SLVSGFHPNN FYAPIDSAAY YGSSSFNIEN WDTSRNIMKT ITTAAMINST TPPSQGKLWL  360
KL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803760.11e-168PREDICTED: transcription factor CYCLOIDEA-like
RefseqXP_016462466.11e-168PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A1S3ZDU91e-166A0A1S3ZDU9_TOBAC; transcription factor CYCLOIDEA-like
TrEMBLA0A1U7YYF61e-166A0A1U7YYF6_NICSY; transcription factor CYCLOIDEA-like
STRINGXP_009803760.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.15e-24TCP family protein