PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00475g00053.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 201aa    MW: 22880.8 Da    PI: 9.0777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00475g00053.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-18103153255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y GVr+++ +g+++AeIr p   + k +r +lg++ t+e+Aa a+++a+ k++g
  Peaxi162Scf00475g00053.1 103 RYMGVRRRP-WGKFAAEIRNP---NkKGARLWLGTYETPEDAALAYDQAAFKIRG 153
                               699******.**********9...4345*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.762103161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-31103162IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22103162IPR016177DNA-binding domain
SMARTSM003807.2E-36103167IPR001471AP2/ERF domain
CDDcd000185.00E-31103163No hitNo description
PfamPF008471.3E-13103153IPR001471AP2/ERF domain
PRINTSPR003671.9E-12104115IPR001471AP2/ERF domain
PRINTSPR003671.9E-12143163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MYQETSISHT DLSILENIKY HLLNDSDFSQ ILSMFDPCIS NADIINSPNS SFDSSPSGES  60
SWGDMVPNNI NSSWERVDKL ELKEVKEEPV VARGVHASKD WNRYMGVRRR PWGKFAAEIR  120
NPNKKGARLW LGTYETPEDA ALAYDQAAFK IRGSKARLNF PHLIGSDMSQ PIRVAPRRRC  180
HSQELSSSFV ENVPLKKRKL N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-27104161360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-27104166668ATERF1
3gcc_A3e-27104166668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176198RRRCHSQELSSSFVENVPLKKRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593488.11e-108PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K11e-39ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A2G2XMS41e-108A0A2G2XMS4_CAPBA; Ethylene-responsive transcription factor 2
STRINGXP_009593488.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-41ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]