PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00472g00069.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 440aa    MW: 49079.6 Da    PI: 7.0647
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00472g00069.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-17106155155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW+++I+d       k+++lg f+ta  Aa+a+++a+ k++g
  Peaxi162Scf00472g00069.1 106 SQYRGVTFYRRTGRWESHIWDG-----GKQVYLGGFDTAHAAARAYDRAAIKFRG 155
                               78*******************3.....5************************998 PP

2AP239.41.5e-12198245152
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkk 52 
                               s+++GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ k
  Peaxi162Scf00472g00069.1 198 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAAIK 245
                               79********.7******...5...334336**********99*********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-10106155IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-16106165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-17107164IPR001471AP2/ERF domain
SMARTSM003801.9E-30107169IPR001471AP2/ERF domain
PROSITE profilePS5103218.044107163IPR001471AP2/ERF domain
CDDcd000186.46E-12107165No hitNo description
SuperFamilySSF541716.41E-16198258IPR016177DNA-binding domain
PfamPF008475.2E-8198245IPR001471AP2/ERF domain
CDDcd000181.08E-24198258No hitNo description
PROSITE profilePS5103215.106199256IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-15199257IPR001471AP2/ERF domain
SMARTSM003809.8E-30199262IPR001471AP2/ERF domain
PRINTSPR003671.9E-5200211IPR001471AP2/ERF domain
PRINTSPR003671.9E-5238258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MFDLNLSCDD VPEESDQLNE LSVTQMENSR TSSTIGDDDN SCSDHMSNCY TFDILKANRK  60
ESENLGSFVT KELLPLSLND QSMVLAQQQR LQVIKKSRRG PRSRSSQYRG VTFYRRTGRW  120
ESHIWDGGKQ VYLGGFDTAH AAARAYDRAA IKFRGLDADI NFNVSDYEED LKQMKNFSKE  180
EFLHILRRQS TGFSRGSSKF RGVTLHKCGR WEARMGQLLG KKYIYLGLFD SEIEAARAYD  240
KAAIKSNGRE AVTNFELSTY EGVLSSETAD TGGTSHNLDL RLGISPSSCA DNQHGNTSQM  300
GISQCRPGSN GLPEHREVLS SASTTPRSML LHGQHMLDQH PLHWNGPNDN LFPTFKGTAI  360
EKGLEVDTLS KWMRQDQNSY GGSPTAPFFS TAASSGFVNS AISGPSAVVH QLHFPSRALP  420
YHYSPSLTNE TFTLLLQELK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339057.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotB8AMA91e-100AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A2H4FXU90.0A0A2H4FXU9_PETHY; BOB
STRINGPGSC0003DMT4000287060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-97related to AP2.7