PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00391g00048.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 411aa    MW: 43648.9 Da    PI: 8.5455
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00391g00048.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.22.1e-40101206389
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                               ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+ + s
  Peaxi162Scf00391g00048.1 101 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGTTIS 185
                               6799****************************************************************99977777777776333 PP

                       TCP  87 sg..................k 89 
                               ++                   
  Peaxi162Scf00391g00048.1 186 APpsksaplflhggatamlgF 206
                               333333334433333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.705106160IPR017887Transcription factor TCP subgroup
PfamPF036345.9E-38106215IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEPHRKKQGG GSSSNSGSEQ HHQHHQHAQQ QHNQETPSSL QLVSLNHQSQ PNDPPTPGSN  60
QPHPHGPFMG GSMQSRTNTT ALLSPSSTTT PNTTTTLSTK VAKKPSKDRH TKVDGRGRRI  120
RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAA TGTGTIPANF STLNVSLRSS  180
GTTISAPPSK SAPLFLHGGA TAMLGFHHQL TNPGFGQDPD DNYMKKRFRE DTSGATSPSA  240
DKPERTGVEG TEPGSESNKP GSSQPSSYIP APAMWAVAAP GAGNVGNAFW MLPVSGGSGS  300
ATASVGVAQP DQQFWQYKAG SAMQRIGGFE FPGGSRFNPV QLGSMVPVQQ LGLGVSETNM  360
GILSSMNAYN NNSGNNRIDL GMNLEQHQNH HHHSQTQGSD SGDENHKDSQ S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775051.10.0PREDICTED: transcription factor TCP23-like
SwissprotQ9LQF01e-73TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A1U7WCU10.0A0A1U7WCU1_NICSY; transcription factor TCP23-like
STRINGXP_009775051.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.13e-62TCP family protein