PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00385g00620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 707aa    MW: 80413.4 Da    PI: 8.4985
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00385g00620.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR197.21.9e-3012101291
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 
                               fYn+YA+++GFs+r+ + ++s+r++ i +r +vCs+eg++++e+++ +++rr+r+++rtgCka++++k+ + +gkw +tkl++eH
  Peaxi162Scf00385g00620.1  12 FYNSYARRAGFSTRVGAYRRSRRDDAISTRILVCSMEGFTAPEDSS-KERRRQRTTSRTGCKAHMNIKRLHpSGKWAITKLVKEH 95 
                               9*******************************************99.999********************99************* PP

                      FAR1  86 nHelap 91 
                               nHel+p
  Peaxi162Scf00385g00620.1  96 NHELVP 101
                               ****86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-2612101IPR004330FAR1 DNA binding domain
PfamPF105511.3E-24223309IPR018289MULE transposase domain
PROSITE profilePS5096610.905507539IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-9511538IPR007527Zinc finger, SWIM-type
SMARTSM005754.3E-8514541IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MEFESEQAAR VFYNSYARRA GFSTRVGAYR RSRRDDAIST RILVCSMEGF TAPEDSSKER  60
RRQRTTSRTG CKAHMNIKRL HPSGKWAITK LVKEHNHELV PPDKVHILRS HRHISGPARS  120
LIDTLQAAGW GATRIMSVLV KQSGGINNVG FTKTDCQNYM SQCRQKRALG SGAQCIFDYL  180
KQKQAEDPAF FYAVQGGSDN SSGNIFWADS TCPMNYAYFG DTVTFDTTCR TQRYRVPFAP  240
FIGVNHHCQP VLFGCSLLLN ESKSSFVWLF QTWLAAMSGR HPVSITTDHD TIIRSAISEV  300
FPGTRHRFSK SSIFREAQER LSHLLQSFPT FEAEFHKCVN LTETIEEFEL CWESLLGKYT  360
LKDDQWLQSI YDAREHWVPV YLRDTFFGET SISKTSDGTN SFFDGYIDAL TNIHVLITQY  420
EKATASRHEK EVKAEYDTIN ITPSLKTPSP MEKQAANVYT REMFLMFQQE LMATLAYPAT  480
VINDTGSHLV YHVAKFGEDH KVHYVKYSVF EKKASCSCQL FEFSGIPCRH ILATFRVKNV  540
LKLPSHYVLK RWTRKAKSEV VLDEDDLGLP SSDNESFTAR FEKLSLEAMK YVKEGADSKD  600
VYQVSMDALR EASKKVAAAM CSTPSLPQSP LMNKAKEFNL NGNQADCGHS CLVSRDEKIQ  660
ELTTAMVSAT EICEAYQAKL LSILREMEEQ KLRISLKVQS MRLNRIS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231145.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1S3ZJB90.0A0A1S3ZJB9_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_009798613.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]