PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00366g00316.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 208aa    MW: 23339.3 Da    PI: 8.8952
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00366g00316.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-105194344
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              +WT+ E +++ +a + + ++   +W  Ia+++g g++ ++++ ++
  Peaxi162Scf00366g00316.1 51 AWTPKENKKFEQALAVYDKDtpdRWQNIAKYVG-GKSVEEVRQHY 94
                              7********************************.**********9 PP

2Myb_DNA-binding32.71.7e-10138181344
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                               +WT+ E +++ +a + + ++   +W  Ia+++g g++ +++k ++
  Peaxi162Scf00366g00316.1 138 AWTPKENKKFEQALAVYDKDtpdRWQNIAKYVG-GKSVEEVKQHY 181
                               7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.56747102IPR017884SANT domain
SMARTSM007177.0E-1048100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-65195IPR009057Homeodomain-like
CDDcd001676.03E-95194No hitNo description
PfamPF002493.1E-95194IPR001005SANT/Myb domain
SuperFamilySSF466893.21E-1351105IPR009057Homeodomain-like
PROSITE profilePS5129311.759134189IPR017884SANT domain
SMARTSM007178.2E-10135187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-5138182IPR009057Homeodomain-like
CDDcd001676.98E-9138181No hitNo description
SuperFamilySSF466893.74E-13138192IPR009057Homeodomain-like
PfamPF002494.9E-9138181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MTTGMSFDTD STAPSSSCSS ACGYKGDGHL IIRQSKVSIS NNIMASNSLS AWTPKENKKF  60
EQALAVYDKD TPDRWQNIAK YVGGKSVEEV RQHYEILIED LKHIESGGVP FPKYKSGILS  120
YAKAKFLYQP MASNSLSAWT PKENKKFEQA LAVYDKDTPD RWQNIAKYVG GKSVEEVKQH  180
YEILIEDLRH IESGDVPFPK YKSGGKSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2944205177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0488833e-70GU048883.1 Capsicum annuum clone BAC CaCM303O04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562162.11e-46PREDICTED: protein RADIALIS-like 1
SwissprotQ1A1736e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1E5UUT92e-60A0A1E5UUT9_9POAL; Protein RADIALIS-like 3
STRINGXP_009603278.13e-45(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-33RAD-like 6