PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00345g00027.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ARF
Protein Properties Length: 703aa    MW: 78392.3 Da    PI: 7.1219
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00345g00027.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.5e-23129229198
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD
  Peaxi162Scf00345g00027.1 129 FCKILTASDTSTHGGFSVLRKHANEClpqldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGD 211
                               99**************************999543..445568******************************************* PP

                               EEEEEE-SSSEE..EEEEE- CS
                        B3  79 fvvFkldgrsefelvvkvfr 98 
                                +vF   + +++el+v+v+r
  Peaxi162Scf00345g00027.1 212 AFVFL--RGDNGELRVGVRR 229
                               *****..3489999****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.26E-39121258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-39121244IPR015300DNA-binding pseudobarrel domain
CDDcd100174.21E-20128229No hitNo description
SMARTSM010191.3E-20129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041129231IPR003340B3 DNA binding domain
PfamPF023624.5E-21129229IPR003340B3 DNA binding domain
PfamPF065072.3E-31255334IPR010525Auxin response factor
PfamPF023096.1E-6577624IPR033389AUX/IAA domain
SuperFamilySSF542774.91E-13585664No hitNo description
PROSITE profilePS5174526.938588680IPR000270PB1 domain
PfamPF023091.3E-7634678IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MSYDNCEAFQ LAYKTKKGMG SDDLYTELWK ACAGPLVDVP RAGERAYYFP QGHIEQLEAS  60
TNQALNQQIP QFNLPSKILC RVVHVQLRAE TETDEVYAQI TLHPEAEQEE PSSPDPCPPD  120
QPKQSVQSFC KILTASDTST HGGFSVLRKH ANECLPQLDM TQATPTQDLV AKDLHGYEWR  180
FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGDN GELRVGVRRL ARQQSAMPQS  240
VISSQSMHLG VLATASHAIT TQTRFVVYYK PRTSQFIIGL NKYLEAVSHG FSVGMRFRMR  300
FEGEDSPERR FTGTIVGAGD ISSQWSESKW RSLKIQWDEQ ASILRPDRVS PWEIEPFVAP  360
TSVDVAQPGI KSKRPRPLEL PHTETAAASA ASSFWFPGSG PTLKVSHLGS IAEVQSHDNQ  420
LFWSSKQNSS LSNGMSNISC RTHLSGAWQH NMLANGSVNL FRDSVEDNKQ LTARSAILDY  480
GSPMSSRASN GLLLEQVVRG NKREISSACR LFGIDLRTNS NNATTREKEM LGPNVTSNCT  540
DNAPTGPDSS EVDKDRSVEH LNPSEEKKQV QLEALAKDTH RQGLTSSRTR TKVQMQGVRV  600
GRAVDLTALS GYNDLISELE KIFDIKGELC PRNKWEVVYT DDEGDMMLVG DDPWPEFCKM  660
VRRIFIYSSE EVKKMSPRCK LPILSLEGEG TMPSVDSGLK SEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1721835713355Auxin response factor 1
4ldw_A1e-1721835713355Auxin response factor 1
4ldw_B1e-1721835713355Auxin response factor 1
4ldx_A1e-1721835713355Auxin response factor 1
4ldx_B1e-1721835713355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372376KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331201e-120AC233120.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-101i8 map 1, complete sequence.
GenBankHG9754401e-120HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-120HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339725.10.0PREDICTED: auxin response factor 18 isoform X3
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A0V0ISA10.0A0A0V0ISA1_SOLCH; Auxin response factor
STRINGPGSC0003DMT4000003450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23472450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]