PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00334g00123.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 222aa    MW: 25703.8 Da    PI: 6.9653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00334g00123.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-1996146255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y GVr ++ +g+++AeIrd + ng   r++lg+f+taeeAa a+++a+ +++g
  Peaxi162Scf00334g00123.1  96 HYVGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDTAEEAALAYDQAAFSMRG 146
                               79*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.9E-3095154IPR001471AP2/ERF domain
PfamPF008471.1E-1396146IPR001471AP2/ERF domain
CDDcd000181.63E-3096154No hitNo description
PROSITE profilePS5103222.35296154IPR001471AP2/ERF domain
SMARTSM003802.1E-3896160IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2296155IPR016177DNA-binding domain
PRINTSPR003677.5E-1097108IPR001471AP2/ERF domain
PRINTSPR003677.5E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEMKISSHDQ YFPNLDFFQD QYSFLSNELI FMDYDNLTNP WELDSDLNDR EHQVQRSSSY  60
SETINSSKGS NELEEVTSYS IKRKNANKQE KDDERHYVGV RKRPWGKYAA EIRDSTRNGI  120
RVWLGTFDTA EEAALAYDQA AFSMRGTSAL LNFPMGKVQE SLEKIKYSCQ DGLSPAAALK  180
ETHKMRMKNV KRKRNRKKKK TVLVFEDLGV DLLEELLVST SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2995155161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2401941e-100AC240194.8 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-118f23 map 10, complete sequence.
GenBankAC2453451e-100AC245345.7 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-35f20 map 10, complete sequence.
GenBankHG9755221e-100HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465665.11e-89PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y93e-52ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S3ZM983e-88A0A1S3ZM98_TOBAC; ethylene-responsive transcription factor 1B-like
STRINGXP_009625479.18e-89(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-35ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]