PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00317g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 805aa    MW: 88949.6 Da    PI: 6.394
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00317g00020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.74.3e-38682132135
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 
                               +g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+ +++ + +   ++e++ss++ ++
  Peaxi162Scf00317g00020.1  68 TGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGVDQPSKAVEWLLKAAAPSISELPPLEAFPDTMQlSDEKRSSAGTEP 152
                               689*************************************************************555552222333333333322 PP

                       TCP  86 ssg..........kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                               + +          + + ++++s++s++s+ s l+l++ esr kar+ra++r  ek + k++
  Peaxi162Scf00317g00020.1 153 GFDsadleidnddDPNCQQQHSSNSETSKGSGLSLSRsESRIKARERAKKRAVEKEKEKEN 213
                               22255677777753333444666667777778999999*************9999988865 PP

2TCP128.19.1e-404826342135
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssss 69 
                                g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+ +                 +   
  Peaxi162Scf00317g00020.1 482 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAAPSISELPPLeafpdtmqlsdekrssaG--- 563
                               689*************************************************************655555554444332221... PP

                       TCP  70 aseceaesssssasnsssg.................kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                                             +++ +                 ++++++++s++s++s+ s l+l++ esr kar+ra+er  ek + k++
  Peaxi162Scf00317g00020.1 564 -------------TEPGFDsadvemdndddpnynyqQQQQQQPCSSNSETSKGSGLSLSRsESRIKARERAKERAVEKEKEKEN 634
                               .............21111133344444444556675666666699*****************************9999988865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3869210IPR005333Transcription factor, TCP
PROSITE profilePS5136931.91870128IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.956190209IPR017888CYC/TB1, R domain
PfamPF036341.2E-40483631IPR005333Transcription factor, TCP
PROSITE profilePS5136932.181484542IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.68611630IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MEMEEIQTQD RKFARISKKN GRMRGQMGDV QYQDEEEDVG EIKKSSLCDV ARLCGWPTSR  60
IVRVSRTTGG KDRHSKVLTS KGLRDRRVRL SVNTAIQFYD LQDRLGVDQP SKAVEWLLKA  120
AAPSISELPP LEAFPDTMQL SDEKRSSAGT EPGFDSADLE IDNDDDPNCQ QQHSSNSETS  180
KGSGLSLSRS ESRIKARERA KKRAVEKEKE KENEPSIVAH HQNMQPSSSF TELLTVGMTN  240
NNNNNSNTRP NGSFHQTTPR QWSNNPLEYF TSGLLGPSTT RGIDNSTNYS GQTHMGNHPQ  300
PMFSITGDHH PELQHFPFIG GDNLVVPVVT TSGGNNSNEY SLNFSISSAS AASSNAGYNR  360
GTLQSNSSAS PSIIPHFQRF TPIDGSQSLF LGTTNAAAAS VYDALIQIKK EKERTDLQFL  420
SSSMMEEIQK FPRISNKIGN KVDEEYQDDE EDVGEVKKNS LCDVARLCGW PSSRIVRVSR  480
ASGGKDRHSK VWTSKGLRDR RVRLSVNTAI QFYDLQDRLG YDQPSKAVEW LLKAAAPSIS  540
ELPPLEAFPD TMQLSDEKRS SAGTEPGFDS ADVEMDNDDD PNYNYQQQQQ QQPCSSNSET  600
SKGSGLSLSR SESRIKARER AKERAVEKEK EKENESTIVA HHQNIHPSSS FTELLTGGMN  660
NNNNNNTSPV HQNTQRQWSN NPLEYFTSGL LGPSTTRGIN NSTGYSGQVQ LGNHLQPMFS  720
ITGDHQPQLQ HFPFNTQTSN TNEYNLNFSI SSASSASSNA GYNRGTLQSN SSTSPSIMPP  780
LFQRFNPIDG SQSLFLGTTN AAAAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2275543155Putative transcription factor PCF6
5zkt_B2e-2275543155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1752390.0KJ175239.1 Petunia x hybrida cultivar W115 transcription factor TCP6 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591865.11e-173PREDICTED: transcription factor TCP2-like
TrEMBLA0A0X7YPS00.0A0A0X7YPS0_PETHY; Transcription factor TCP6
STRINGXP_009591865.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2