PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00314g00628.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 314aa    MW: 35478.5 Da    PI: 5.9497
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00314g00628.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20109158255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  Peaxi162Scf00314g00628.1 109 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDEAALRFKG 158
                               7********.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-37109172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-32109167IPR001471AP2/ERF domain
PROSITE profilePS5103225.185109166IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-22109167IPR016177DNA-binding domain
CDDcd000184.36E-21109167No hitNo description
PfamPF008474.9E-14109158IPR001471AP2/ERF domain
PRINTSPR003671.7E-11110121IPR001471AP2/ERF domain
PRINTSPR003671.7E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSDGKRPFSS NEMEEEEYEY HIQPHHEDPN NIFPIYSARS QHDMSAMVSV LSQVIGNTGN  60
STNDITHSSS SANSSSVHAN PLTLVPQSAA AIQNQSQSIE DQGNSRKRRY RGVRQRPWGK  120
WAAEIRDPKK AARVWLGTFD TAEAAALAYD EAALRFKGNK AKLNFPERVQ GKTEFGYLTT  180
STQDFRNNNI VPQQYFPTNF PSNFQSNFSQ EHYPNVQHYA QLLRGDSNIT DLNFGMSPST  240
LSYQYSSGSF DLSQSSSNTL SALPASHEQM QQPSYNQQQE DEVYMRFPAS HFGNSSSSSG  300
PHETNFWEEF EDRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-25108169163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587768.11e-113PREDICTED: ethylene-responsive transcription factor ERF113-like
RefseqXP_016504834.11e-113PREDICTED: ethylene-responsive transcription factor ERF113-like isoform X1
SwissprotQ9FH549e-54EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1S4CV081e-112A0A1S4CV08_TOBAC; ethylene-responsive transcription factor ERF113-like isoform X1
STRINGXP_009587768.11e-112(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.18e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]