PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00299g00345.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 335aa    MW: 37596.1 Da    PI: 6.2502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00299g00345.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.1e-12167214355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++++k+Lq
  Peaxi162Scf00299g00345.1 167 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKHLKQLQ 214
                               6799************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-16168225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16169230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-12169218No hitNo description
SMARTSM003532.8E-14170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
EMEYHGFNQQ WPISSFDELS AISSIAASFG ENNYLHESSP FISQPIVGLK RPAADDQLSQ  60
IVEQRPLKNH KTSPSWNNYE NNHILSSSQS AASPNYHLIN SNGYTNQYVN VKPKEESTTM  120
SSSSITYAAD QMVSQDSFAN QNYMFKANFQ GANKNVISTN GKLTQAQDHI IAERKRREKL  180
SQRFIALSAL IPGLKKMDKA SVLGDAIKHL KQLQERVKTL EEQTRKKPVE SVVFVKKYEL  240
YGDGENSSSD ENFSSGTLQV DEPLPEIEAR ISERNVLVRI HCEKRKGIVD KTVAEIEKLH  300
LSVINSCALS FGNSALDMTI IAQMDEEFAM TVQDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12168217857Transcription factor MYC2
5gnj_B1e-12168217857Transcription factor MYC2
5gnj_E1e-12168217857Transcription factor MYC2
5gnj_F1e-12168217857Transcription factor MYC2
5gnj_G1e-12168217857Transcription factor MYC2
5gnj_I1e-12168217857Transcription factor MYC2
5gnj_M1e-12168217857Transcription factor MYC2
5gnj_N1e-12168217857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177ERKRRE
2173178RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-121HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232955.10.0PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0722e-58BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1J6KYH20.0A0A1J6KYH2_NICAT; Transcription factor bhlh25
STRINGXP_009779237.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-60bHLH family protein