PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00280g01014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 110aa    MW: 12436.9 Da    PI: 9.0806
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00280g01014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-10347345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WT    +++ +a + + ++   +W+ Iar++g g+++++++ ++ 
  Peaxi162Scf00280g01014.1  3 SWTVRQNKKFEEALAIYDKDtpdRWHNIARCVG-GKSPEEVRRHYE 47
                              6********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.309154IPR017884SANT domain
SMARTSM007171.4E-7152IPR001005SANT/Myb domain
SuperFamilySSF466897.67E-13357IPR009057Homeodomain-like
CDDcd001673.52E-9350No hitNo description
PfamPF002493.4E-7347IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-5356IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MASWTVRQNK KFEEALAIYD KDTPDRWHNI ARCVGGKSPE EVRRHYELLV KDIMQIENGQ  60
VPLPNYRNAG SNSTGYANEQ SQTSISHDLR NTVNMSTSRL LAISGNSLKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-324721179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. Required for female gametophyte development. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244969.14e-50PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-33RADL6_ARATH; Protein RADIALIS-like 6
SwissprotQ9SIJ52e-33RADL2_ARATH; Protein RADIALIS-like 2
TrEMBLA0A1J6J2A29e-49A0A1J6J2A2_NICAT; Protein radialis-like 6
STRINGXP_009771192.14e-49(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-36RAD-like 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang B, et al.
    RSM1, an Arabidopsis MYB protein, interacts with HY5/HYH to modulate seed germination and seedling development in response to abscisic acid and salinity.
    PLoS Genet., 2018. 14(12): p. e1007839
    [PMID:30566447]