PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00270g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ZF-HD
Protein Properties Length: 270aa    MW: 30298.6 Da    PI: 7.9335
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00270g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.56.6e-3348106259
               ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                               ++v YkeClkNhAas+GghavDGCgEfmps++ + ++++++kCaACgCHRnFHRre+++
  Peaxi162Scf00270g00002.1  48 TAVIYKECLKNHAASIGGHAVDGCGEFMPSSDFSqSNPSSFKCAACGCHRNFHRREPAD 106
                               6799**************************998889*******************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.3E-2850104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1950107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-3052103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.57552103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE patternPS00028090113IPR007087Zinc finger, C2H2
SuperFamilySSF466892.43E-19144215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28147216IPR009057Homeodomain-like
TIGRFAMsTIGR015653.6E-24154211IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDLTCIPTPT KTPDSDNDTP PHTTQPLKPL SFINGKNHQL HHQQPPCTAV IYKECLKNHA  60
ASIGGHAVDG CGEFMPSSDF SQSNPSSFKC AACGCHRNFH RREPADDHFS TTHFIDFRHH  120
ILPPIRRYSP SPSLSPPPQP QPVTPKAEFN SSGRKRFRTK FTQEQKDKMY TFSEKLGWKM  180
QKCDEVMVDE FCNEVGVGKS VLRVWMHNNK NTFSKKDLQN TNNSDNSEKN ITNGFNINGT  240
SSNEDHHNNN DNSNCGLQLH ISTNGSCSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-221552121875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229999.11e-122PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG08e-59ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A314KKG81e-120A0A314KKG8_NICAT; Zinc-finger homeodomain protein 9
STRINGXP_009788342.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-53homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]