PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00269g00034.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 452aa    MW: 50862.2 Da    PI: 6.2407
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00269g00034.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.23.1e-30101183177
                       TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaes 77 
                               a+g+kdrhsk++T+ g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l +       + +sa+++ + +
  Peaxi162Scf00269g00034.1 101 ATGRKDRHSKVSTATGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALDNPfevfskKIDSANKALNRR 183
                               589***********************************************************999888877444443332222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-29102209IPR005333Transcription factor, TCP
PROSITE profilePS5136929.131104162IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MNHHLQVSDE EEEESEDEKE EEVFQENAQA IYQNHNQMQH LQQAEWANFT SPSATLVSKH  60
QKKTQLCPSY KEEIKKVALK RKPKRAKPDV IEVHAGRIVR ATGRKDRHSK VSTATGPKDR  120
RVRLSPNTAI QFYDVQDRLG YDRPSKAIDW LIKEAKAAID ALDNPFEVFS KKIDSANKAL  180
NRRSISGYRN AEGEVGQFAL EQRCPADKKM DLEEMHCHSS ELNGTMHYSA DQFPGEGYIE  240
RSRKVSQDDG NIPKYKCGLE QQQQLNDSRI GNLSLFSSSN DVKNQYLSEF QTYTQGHFNS  300
ESKSQAQGNL LNFQSSQDES IVFSGDHQGF LTTSVPLNSN SNLGMTRLKE GTNWNAQVGE  360
DSTFSFISHH FPSVLGQNHL FCQREPLQSS YFPQTSVPLS TQFQTISFAN IGLARDDLFG  420
LSTSPIIEGA DEGQGTISNP SANATSLLQY QL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-18109162154Putative transcription factor PCF6
5zkt_B1e-18109162154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443396.11e-138PREDICTED: transcription factor TCP3-like
TrEMBLA0A4D6FCF80.0A0A4D6FCF8_PETHY; TCP11
STRINGXP_009771449.11e-134(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.12e-35TCP domain protein 10