PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00243g00102.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 151aa    MW: 16690.1 Da    PI: 10.1747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00243g00102.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20959256
                       AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Peaxi162Scf00243g00102.1  9 HYRGVRKHP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 59
                              69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.00E-29965No hitNo description
SMARTSM003801.3E-36972IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-31966IPR001471AP2/ERF domain
PfamPF008471.4E-13958IPR001471AP2/ERF domain
PROSITE profilePS5103222.418966IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-22966IPR016177DNA-binding domain
PRINTSPR003671.6E-101021IPR001471AP2/ERF domain
PRINTSPR003671.6E-103248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MASTTREGHY RGVRKHPWGR YAAEIRDPWK KTRVWLGTFD TPEEAALAYD GAARSLRGAK  60
AKTNFPPPPP PPLPPLDLNV PSDHRWMTSS SSLSGRRTLM IGDFLQMGPP EMNFPVAGVS  120
PVKENDGGAK FFGVVTRGLP IDLNEPPPLW M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21966260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-21966563ATERF1
3gcc_A6e-21966563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6690803e-78AB669080.1 Nicotiana tabacum NtERF#116 gene for ethylene response factor #116, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593007.11e-72PREDICTED: ethylene-responsive transcription factor 12
RefseqXP_016449577.11e-72PREDICTED: ethylene-responsive transcription factor 12-like
SwissprotQ94ID64e-39ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A1S3YC493e-71A0A1S3YC49_TOBAC; ethylene-responsive transcription factor 12-like
STRINGXP_009593007.15e-72(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-36ERF domain protein 12