PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00242g01318.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 398aa    MW: 45353.3 Da    PI: 7.4302
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00242g01318.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS99.35.5e-31224712250
                      GRAS  12 vssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....fsevsPil 91 
                               v+ +++ +a++lL+  ++ +s + +p+qR++ +++ AL+ r+ r++  + ++  +  e ++++++e l++l           P  
  Peaxi162Scf00242g01318.1   2 VARKKFDRARKLLSLCKQSSSATENPVQRVVYHLADALQDRIDRETRLMPSSGeNDIEVHPNSVEEPLMSLYPavfaCKPEYPRC 86 
                               788999**************************************77766666645556666666666665433432234456899 PP

                      GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakf.Aeelgv 174
                               ++s+++  qaIl+++ +++r+H iDf+i+ G++W+ +lqa+a ++  +   l+i +vg      ++++  +g+r +++ Ae+l++
  Peaxi162Scf00242g01318.1  87 QLSQFAGVQAILDSTRTARRIHLIDFGIKSGAHWIIFLQAFAGQDgCSLELLKISAVGT----CEKMIDDIGKRSSDYsAETLNI 167
                               ******************************************999445669********....9***********9975999*** PP

                      GRAS 175 pfefnvlvakrledleleeLrvkpgEalaV...nlvlqlhrlldesvsleserdevLklv...kslsPkvvvvveqeadhns 250
                               pf f++ ++++l  ++ e+++++ +E++     n+ ++   + ++ +s++  r ++L+      sl+P ++vv+e ea++++
  Peaxi162Scf00242g01318.1 168 PFCFKT-IVSDLMHFKKESFQLEGDEVVTFllqNSCIRPDAFQERVLSIRG-RGNLLRYSsldHSLNPCIMVVTEVEASTDA 247
                               ******.6999****************998233444555555555555555.9999985422379************99865 PP

2GRAS27.83.1e-09280345301365
                      GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdr 365
                                g+er  rh +le Wr+ + ++G+ + +ls +   qa+lll+  +  g  ++e + ++l++ Wk+ 
  Peaxi162Scf00242g01318.1 280 HGEERGPRHAKLEVWRKLFARFGLAESELSPSSLFQANLLLQWSQYAGlCSIEMDGKCLIFSWKGT 345
                               588999*************************************9966659*************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.591333IPR005202Transcription factor GRAS
PfamPF035141.9E-282247IPR005202Transcription factor GRAS
PfamPF035141.1E-6280345IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MVARKKFDRA RKLLSLCKQS SSATENPVQR VVYHLADALQ DRIDRETRLM PSSGENDIEV  60
HPNSVEEPLM SLYPAVFACK PEYPRCQLSQ FAGVQAILDS TRTARRIHLI DFGIKSGAHW  120
IIFLQAFAGQ DGCSLELLKI SAVGTCEKMI DDIGKRSSDY SAETLNIPFC FKTIVSDLMH  180
FKKESFQLEG DEVVTFLLQN SCIRPDAFQE RVLSIRGRGN LLRYSSLDHS LNPCIMVVTE  240
VEASTDAEIL WIYLFLIFWK LALGETTARL KDYSKYNYYH GEERGPRHAK LEVWRKLFAR  300
FGLAESELSP SSLFQANLLL QWSQYAGLCS IEMDGKCLIF SWKGTLIDYV TLSIVFHLPP  360
RVTCNIAYSS PIELDIRKMQ KKLKKSDAES KMPEDSNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015160788.11e-101PREDICTED: scarecrow-like protein 28
TrEMBLM0ZMM41e-100M0ZMM4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000039541e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85001728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.12e-15GRAS family protein