PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00207g01542.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 363aa    MW: 40220.1 Da    PI: 4.4585
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00207g01542.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.7e-1895144255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a++  +++++g
  Peaxi162Scf00207g01542.1  95 QYRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNSAEEAARAYDVEARRIRG 144
                               69*******.**********954...3************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-2295154IPR016177DNA-binding domain
SMARTSM003804.3E-3795158IPR001471AP2/ERF domain
PROSITE profilePS5103223.78895152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3195154IPR001471AP2/ERF domain
CDDcd000188.15E-3295153No hitNo description
PfamPF008475.0E-1196144IPR001471AP2/ERF domain
PRINTSPR003675.6E-1196107IPR001471AP2/ERF domain
PRINTSPR003675.6E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MCGGAIISDL VPPSRTSRRL TADLLWGSSD LKKNPSNYHS KPLRSSKFID LDDEFEADFQ  60
DFSDDIKPFG SKSVKSADAN CEEADKSSKR KRRNQYRGIR QRPWGKWAAE IRDPRKGIRV  120
WLGTFNSAEE AARAYDVEAR RIRGNKAKVN FPDETPVSAS RRTVKQNPQK VEESSNTVQL  180
NTNFFNNLDS GCYDSLDFVE EKPTAKQYAY EDVCFTAGDM GLGSFSPSAG ADVYFTSDEG  240
SNTFDCSDFG WGEPGSRTPE ISSVLSAVAE SNGTQFDEDA SPAKRLKSCT NNSVQDDGNT  300
VDKLSEELSA FESQMKFLQI PYLEGNWDAS VDTLLNADAT QEVGNAMDLW SFDDVPSLMG  360
GVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2195152260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2595970.0HQ259597.1 Petunia x hybrida ethylene-responsive-element-binding factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605490.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
RefseqXP_016515225.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLE3VVR20.0E3VVR2_PETHY; Ethylene-responsive-element-binding factor 3
STRINGXP_009605490.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-73related to AP2 12