PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00207g00109.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family RAV
Protein Properties Length: 262aa    MW: 30914.8 Da    PI: 10.2639
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00207g00109.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.5e-112573155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              s++kGV    ++g W A+I+       + k ++lg+f +++eAa a++ a+ +l+g
  Peaxi162Scf00207g00109.1 25 SKFKGVV-GQRNGNWGARIYF------NhKMVWLGTFKSEKEAAMAYDSAAIRLRG 73
                              79****6.6779********9......44**********99*************98 PP

2B372.93.8e-23138227183
                               EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+k+l++sdv  + +rl +pkkfa ++      + ++ +++++++ d+s rsW+++++y+++ +++vlt+GW++F +++gL+++D
  Peaxi162Scf00207g00109.1 138 FQKELSQSDVEIKlNRLLIPKKFALKYfpqicnEFQESKDVEMIFFDSSKRSWKFRYCYWRSNKSFVLTTGWNKFKEDKGLEAKD 222
                               89*******97555*******************7788899********************************************* PP

                               EEEEE CS
                        B3  79 fvvFk 83 
                                vvF+
  Peaxi162Scf00207g00109.1 223 RVVFS 227
                               ****9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-142582IPR016177DNA-binding domain
PfamPF008471.3E-52573IPR001471AP2/ERF domain
CDDcd000181.51E-212583No hitNo description
PROSITE profilePS5103215.9752681IPR001471AP2/ERF domain
SMARTSM003801.6E-172687IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-152681IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.5E-28134229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-24137232IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-19137226No hitNo description
PfamPF023626.2E-20138227IPR003340B3 DNA binding domain
SMARTSM010191.4E-11138242IPR003340B3 DNA binding domain
PROSITE profilePS5086311.448139244IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MISSTTSSNH KSKNERKACS NMSGSKFKGV VGQRNGNWGA RIYFNHKMVW LGTFKSEKEA  60
AMAYDSAAIR LRGKDSHRNL PWTKFTDQEP KFQAQFATED ILRMIKQGSY PRKFQEFLKE  120
KYEEGYPLKT LQCHKQLFQK ELSQSDVEIK LNRLLIPKKF ALKYFPQICN EFQESKDVEM  180
IFFDSSKRSW KFRYCYWRSN KSFVLTTGWN KFKEDKGLEA KDRVVFSSCE YKIGPTKICM  240
VFEIDVVKQP KFFKLFGALI KY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-181352515115B3 domain-containing transcription factor NGA1
5os9_B1e-181352515115B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771974.11e-110PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_016492322.11e-110PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6885e-71RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A1S4BTX11e-108A0A1S4BTX1_TOBAC; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A1U7WBE01e-108A0A1U7WBE0_NICSY; AP2/ERF and B3 domain-containing transcription factor At1g51120
STRINGXP_009771974.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.15e-73RAV family protein