PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00201g00037.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 286aa    MW: 31817.6 Da    PI: 9.6369
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00201g00037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.77.6e-2953159299
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa 70 
                                g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk ++WL+ + k  i++l+ +                s    
  Peaxi162Scf00201g00037.1  53 FGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVVDWLIDATKNDIDKLPPLqippgyfnrfqqppffS---- 133
                               689*************************************************************55555555432222221.... PP

                       TCP  71 seceaesssssasnsssg....kaaksaakskk 99 
                                  ++++ +++++    +    + a+ ++ks  
  Peaxi162Scf00201g00037.1 134 ---QESALREKSK----AidieSGASGKNKSIA 159
                               ...1111111111....1223222222221111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.37255113IPR017887Transcription factor TCP subgroup
PfamPF036342.9E-2655154IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNNPSGNKFE TKQESGGTNN NNIKFSKSTT TPSSSRQWGG FKNPRIVRVS RAFGGKDRHS  60
KVCTIRGLRD RRIRLSVPTA IQLYDLQERL GLSQPSKVVD WLIDATKNDI DKLPPLQIPP  120
GYFNRFQQPP FFSQESALRE KSKAIDIESG ASGKNKSIAS NDDQGNNQQD IGGYTIPQMS  180
AQSFFPLGNS YYQFEPSNLS LAQFGHPQME DSQNTLPLSL ASSLPFPSGS HQLYFNPTAA  240
TPFPPIIPPY MTNYPIDQTD SRAQLSHFHF LNSNLAGFLY SCTSLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1860114155Putative transcription factor PCF6
5zkt_B3e-1860114155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781748.11e-108PREDICTED: transcription factor TCP5-like
RefseqXP_016450456.11e-108PREDICTED: transcription factor TCP5-like
TrEMBLA0A1S3YDZ21e-107A0A1S3YDZ2_TOBAC; transcription factor TCP5-like
TrEMBLA0A1U7WT271e-107A0A1U7WT27_NICSY; transcription factor TCP5-like
STRINGXP_009781748.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5