PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00199g00056.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 228aa    MW: 25787.7 Da    PI: 9.8973
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00199g00056.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-19100151256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                               +y+GVr+++ +g+++AeIrdp     kr+r +lg++ t+e+Aa a+++a+ kl+g+
  Peaxi162Scf00199g00056.1 100 RYRGVRRRP-WGKFAAEIRDP---TrKRARLWLGTYETPEDAALAYDRAAYKLRGA 151
                               69*******.**********8...3346**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.40E-3199160No hitNo description
SuperFamilySSF541717.85E-23100159IPR016177DNA-binding domain
SMARTSM003804.5E-35100164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-31100159IPR001471AP2/ERF domain
PfamPF008479.1E-14100150IPR001471AP2/ERF domain
PROSITE profilePS5103224.724100158IPR001471AP2/ERF domain
PRINTSPR003677.1E-13101112IPR001471AP2/ERF domain
PRINTSPR003677.1E-13140160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MQLGHISSEF DLTIITHSIE HSSFSELSPL FNYNDSIFQT PSSNSSSTGS CTNWDQILND  60
NNIGDDTSTT PSPTSFSDQS ESLLRKPEER GVQASPNWQR YRGVRRRPWG KFAAEIRDPT  120
RKRARLWLGT YETPEDAALA YDRAAYKLRG ARASLNFPHL ISSNVREINR VKPKRRLKSI  180
EHSSSQNTAN IDTPSPKKRN VELINSLAKA NWNSHISIME RIELGTLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2799163468ATERF1
3gcc_A1e-2799163468ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178PKRRLKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2596050.0HQ259605.1 Petunia x hybrida ethylene-responsive-element-binding factor 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164457.11e-55PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLE3VVS01e-97E3VVS0_PETHY; Ethylene-responsive-element-binding factor 11
STRINGPGSC0003DMT4000910023e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-38ethylene-responsive element binding factor 13