PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00195g00082.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-YB
Protein Properties Length: 163aa    MW: 17533.4 Da    PI: 5.3196
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00195g00082.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.81.8e-5426120195
                     NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                               vreqdr+lPian++rimkk lPanaki+k+ak+tvqecvsefisf+tseasdkcq+ekrktingddl+wal+tlGfedy+eplk+
  Peaxi162Scf00195g00082.1  26 VREQDRYLPIANIGRIMKKGLPANAKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLIWALGTLGFEDYIEPLKA 110
                               69*********************************************************************************** PP

                     NF-YB  86 ylkkyreleg 95 
                               yl +yre ++
  Peaxi162Scf00195g00082.1 111 YLIRYREGDT 120
                               ******9665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.6E-5123123IPR009072Histone-fold
SuperFamilySSF471132.79E-3829123IPR009072Histone-fold
PfamPF008081.5E-273296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-196078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.5E-197997No hitNo description
PRINTSPR006152.5E-1998116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSEAPGSPGG GGSHDSGGDR SPQSNVREQD RYLPIANIGR IMKKGLPANA KIAKEAKDTV  60
QECVSEFISF ITSEASDKCQ KEKRKTINGD DLIWALGTLG FEDYIEPLKA YLIRYREGDT  120
KGSARGGDAS ARKDIVGGQL GSSTQFVYDG SFTQGLDYGN SQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4626117192Transcription factor HapC (Eurofung)
4g92_B3e-4626117192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-65HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074252.11e-103nuclear transcription factor Y subunit B-10-like
RefseqXP_027772469.11e-103nuclear transcription factor Y subunit B-10-like
SwissprotQ8VYK41e-76NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0V0HI521e-102A0A0V0HI52_SOLCH; Putative ovule protein
STRINGXP_009771322.13e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.19e-72nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]