PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00166g00045.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TCP
Protein Properties Length: 328aa    MW: 36228.3 Da    PI: 7.9607
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00166g00045.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.63.4e-32512062108
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec.....ea 75 
                                g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ ++ +++                
  Peaxi162Scf00166g00045.1  51 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLQIPPHqgnfsnP-NlypmlGV 134
                               689*************************************************************777765544330.03333422 PP

                       TCP  76 esssssasnsssg.......................................kaaksaakskksqksaasal 108
                               +ss s++++s+++                                       + ++s++++ +s ++++ ++
  Peaxi162Scf00166g00045.1 135 GSSTSQVNTSNKEglksnwdvtlepsnkeglnaipynsnflkwdpsnlslahSVSSSTHHGANSVHQQEDVH 206
                               333333332222244455666666666666667777666777766666666433333334444444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.77953111IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-2853125IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MITREVKGKN PSDHHDVNTK TPKTDPSSST NATTSWTRLK DPRIVRVSRA FGGKDRHSKV  60
CTVRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAAKDEIDE LPPLQIPPHQ  120
GNFSNPNLYP MLGVGSSTSQ VNTSNKEGLK SNWDVTLEPS NKEGLNAIPY NSNFLKWDPS  180
NLSLAHSVSS STHHGANSVH QQEDVHNFNV LTFPTTMSMP MLGNSQVFVY PQGLPQSFFH  240
SHNINVGASS SEFDPKEINF QMLSSSTSEN PLSSSNSFRH SIESSTSHSH DSAIYIFFGI  300
SSLITNFTVQ LVAAAAAAEE KEKRKSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1958112155Putative transcription factor PCF6
5zkt_B6e-1958112155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754413e-83HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792504.11e-126PREDICTED: transcription factor TCP13-like
TrEMBLA0A1U7XZU91e-124A0A1U7XZU9_NICSY; transcription factor TCP13-like
STRINGXP_009792504.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.13e-47plastid transcription factor 1