PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00165g01727.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family E2F/DP
Protein Properties Length: 104aa    MW: 12041.8 Da    PI: 5.7901
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00165g01727.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP50.34e-164563371
                   E2F_TDP 33 eLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71
                              e+++                d+kn rRR+YD+lNVL+al+++e+ +++eirwkg
  Peaxi162Scf00165g01727.1  4 EIIALfkatesnfsvphnesDEKNARRRVYDALNVLMALDIVER-DRKEIRWKG 56
                              5544445555666667777799**********************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-21160IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-5156IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.8E-13256IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-111257IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
VADEIIALFK ATESNFSVPH NESDEKNARR RVYDALNVLM ALDIVERDRK EIRWKGLPNS  60
DSRDMEETKM LHAELMAKIG KKAAYLKDLE EQVRSISMFF LILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-151633495PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542614.17e-50PREDICTED: transcription factor-like protein DPA isoform X1
RefseqXP_016542615.17e-50PREDICTED: transcription factor-like protein DPB isoform X2
SwissprotQ9FNY31e-30DPA_ARATH; Transcription factor-like protein DPA
TrEMBLK4CR941e-47K4CR94_SOLLC; Uncharacterized protein
STRINGSolyc09g010670.2.13e-47(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1488399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.37e-32Transcription factor DP