PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00152g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 238aa    MW: 26756 Da    PI: 5.5066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00152g00009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-20104152355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a+ +++g
  Peaxi162Scf00152g00009.1 104 YRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFVTAEDAARAYDRAAIEFRG 152
                               9*******.**********94....36************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-13103152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32103160IPR001471AP2/ERF domain
SMARTSM003803.8E-39103166IPR001471AP2/ERF domain
PROSITE profilePS5103224.922103160IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23103162IPR016177DNA-binding domain
PRINTSPR003671.6E-11104115IPR001471AP2/ERF domain
CDDcd000181.65E-23104160No hitNo description
PRINTSPR003671.6E-11126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVEALQNVIT GSTTTNASLF STLENVMNYT LPLYSSPSPS TSMSSTFEPP LLRVPEETES  60
CNFCKIKGCL GCDYFGSTPS NDDSKNKKKS SINVVKKKKK KNNYRGVRQR PWGKWAAEIR  120
DPRKAARVWL GTFVTAEDAA RAYDRAAIEF RGPRAKLNFP FSDYTLTEEQ STSASEQQKE  180
PESQLLEQGN VGLASQMELS VTKDNEFWDQ LMSDNEIQRL LKMMDFSGSP ADFDFSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-25103161261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-25100161264ATERF1
3gcc_A1e-25100161264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
186100KKKSSINVVKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016446024.14e-87PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ065e-34EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1S3Y1L98e-86A0A1S3Y1L9_TOBAC; ethylene-responsive transcription factor ERF109-like
STRINGXP_009784619.15e-82(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-28redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]