PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00146g01325.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-YB
Protein Properties Length: 140aa    MW: 15581.7 Da    PI: 5.2898
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00146g01325.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB157.22.7e-4928119293
                     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                               reqdr+lPian+srimkk++P n+ki+kdak+ vqecvsefisf+tseasdkcqre+rkting dll a+  lGfedy++plk++
  Peaxi162Scf00146g01325.1  28 REQDRLLPIANISRIMKKAIPPNGKIAKDAKDAVQECVSEFISFITSEASDKCQRERRKTINGYDLLLAMLALGFEDYIDPLKMF 112
                               89*********************************************************************************** PP

                     NF-YB  87 lkkyrel 93 
                               l +y e 
  Peaxi162Scf00146g01325.1 113 LDRYTER 119
                               ****885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.5E-4725122IPR009072Histone-fold
SuperFamilySSF471134.81E-3530123IPR009072Histone-fold
PfamPF008082.8E-263397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-166179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.5E-168098No hitNo description
PRINTSPR006152.5E-1699117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MADGQQGSAN SHESDEHSPP PIGSKNIREQ DRLLPIANIS RIMKKAIPPN GKIAKDAKDA  60
VQECVSEFIS FITSEASDKC QRERRKTING YDLLLAMLAL GFEDYIDPLK MFLDRYTERL  120
TKAADGSIER EGMLPTPTSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4327118192Transcription factor HapC (Eurofung)
4g92_B2e-4327118192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326024.19e-62nuclear transcription factor Y subunit B-10 isoform X2
SwissprotQ5QMG36e-55NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBLA0A3Q7HVS92e-60A0A3Q7HVS9_SOLLC; Uncharacterized protein
STRINGXP_009767971.13e-60(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2510022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.72e-54nuclear factor Y, subunit B1