PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00129g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ZF-HD
Protein Properties Length: 374aa    MW: 40802 Da    PI: 8.2443
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00129g00014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer112.12.9e-3574131460
               ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 
                               v YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+e++
  Peaxi162Scf00129g00014.1  74 VLYKECLKNHAASLGGHAVDGCGEFMPSPSANaTDPTSLKCAACGCHRNFHRREPEDQ 131
                               78****************************9999********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.8E-2974128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-2376130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.5E-3276127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.48976127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.87E-18235303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-29236304IPR009057Homeodomain-like
TIGRFAMsTIGR015654.8E-25242299IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDITNNNHNH NNNNTSTTTA TTHVTKTTEA ESHETQTPIR IQPVKPISFS NGVLKRHNSL  60
QHQHQLHHHH PVVVLYKECL KNHAASLGGH AVDGCGEFMP SPSANATDPT SLKCAACGCH  120
RNFHRREPED QVLVNHNTTA ALEYQPLHRH HPPPPPPPQL ALPPHNHHGG AHSTGSPINS  180
PSSPPPISSA YYPASAPHML LALSTGGGLS APPPPPPDSN NINNLNQNLI SPVQFSSNPN  240
SRKRFRTKFT QNQKERMLEF AERVGWKIQK RDEDVINEFC RNIGVEKGVL KVWMHNNKNT  300
FGKKSDAVNS NSNVAATVIH NINVNTSNGN GFGHVDPTTT ALEFHLHHES STDKNDDSVS  360
AHNVVGTNGS SSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-212413001675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620291.11e-114PREDICTED: zinc-finger homeodomain protein 9-like
TrEMBLA0A1S4B4C91e-110A0A1S4B4C9_TOBAC; zinc-finger homeodomain protein 9-like
STRINGXP_009620291.11e-113(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.19e-36homeobox protein 30